chore: update node_modules with new binary files and dependencies

- Add new binary files for nodemon, onnxruntime-web, and xenova/transformers
- Update various JavaScript and TypeScript files in node_modules
- Remove unused files and dependencies
- Add new test fixtures and documentation files

node_modules/protobufjs/cli/wrappers/closure.js

@@ -0,0 +1,7 @@
+(function($protobuf) {
+    "use strict";
+
+    $OUTPUT;
+
+    return $root;
+})(protobuf);