chore: update node_modules with new binary files and dependencies

- Add new binary files for nodemon, onnxruntime-web, and xenova/transformers
- Update various JavaScript and TypeScript files in node_modules
- Remove unused files and dependencies
- Add new test fixtures and documentation files

node_modules/protobufjs/cli/index.d.ts

@@ -0,0 +1,3 @@
+import * as pbjs from "./pbjs.js";
+import * as pbts from "./pbts.js";
+export { pbjs, pbts };