chore: update node_modules with new binary files and dependencies

- Add new binary files for nodemon, onnxruntime-web, and xenova/transformers
- Update various JavaScript and TypeScript files in node_modules
- Remove unused files and dependencies
- Add new test fixtures and documentation files

node_modules/protobufjs/bin/pbjs

@@ -0,0 +1,6 @@
+#!/usr/bin/env node
+var path = require("path"),
+    cli  = require(path.join(__dirname, "..", "cli", "pbjs.js"));
+var ret  = cli.main(process.argv.slice(2));
+if (typeof ret === 'number')
+    process.exit(ret);