chore: update node_modules with new binary files and dependencies

- Add new binary files for nodemon, onnxruntime-web, and xenova/transformers
- Update various JavaScript and TypeScript files in node_modules
- Remove unused files and dependencies
- Add new test fixtures and documentation files

node_modules/@protobufjs/codegen/package.json

@@ -0,0 +1,13 @@
+{
+  "name": "@protobufjs/codegen",
+  "description": "A minimalistic code generation utility.",
+  "version": "2.0.4",
+  "author": "Daniel Wirtz <dcode+protobufjs@dcode.io>",
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/dcodeIO/protobuf.js.git"
+  },
+  "license": "BSD-3-Clause",
+  "main": "index.js",
+  "types": "index.d.ts"
+}